Consolidate scattered files into logical directories to improve workspace organization and discoverability.

Protocol

1. •

   Assess current workspace structure

   • •Catalog loose files in the workspace directory
   • •Identify existing folder structure and naming conventions
   • •Determine semantic relationships and project groupings before considering file types
2. •

   Identify semantic organization opportunities

   • •Group files by project, context, or domain first
   • •Preserve existing directories that represent meaningful organization
   • •Look for related items that should stay together despite different file types
3. •

   Protect special directories

   • •Identify any directories containing file zosite.json files, as well as any directories called Articles or Prompts
   • •Do not touch, move, or reorganize these directories—they are managed project structures
   • •Leave them in place regardless of other organizational changes
4. •

   Create organized folder structure (if not already present):

   • •Projects/ – for active and completed projects
   • •Research/ – for articles, PDFs, and reference materials
   • •Data/ – for spreadsheets, CSVs, and datasets
   • •Documents/ – for notes, plans, and written content
   • •Archive/ – for old or completed items
5. •

   Consolidate files by semantic meaning, then by type:

   • •Prioritize grouping by project or context over pure file type
   • •Move related files together into semantic folders when meaningful
   • •Within semantic folders, organize by type if needed
6. •

   Organize supporting files:

   Projects/ – Project folders and related files

   • •Move project directories and associated content into this structure

   Research/ – Articles, PDFs, and reference materials

   • •Move: PDF files, research documents, reference articles, and external content

   Data/ – Spreadsheets and datasets

   • •Move: CSV files, XLSX files, and other tabular data

   Documents/ – Notes, plans, and written content

   • •Move: Markdown files, text documents, planning documents, and analysis

   Archive/ – Old or completed items

   • •Move: Outdated files, deprecated versions, and completed projects
7. •

   Consolidate without destroying:

   • •Review existing subdirectories for related content and redundancies
   • •Integrate contents into the appropriate semantic structure
   • •Keep all original directories intact—do not delete any folders
8. •

   Ensure there are no remaining loose files in the workspace directory

9. •

   Document the new structure:

   • •Create file WORKSPACE_STRUCTURE.md at the root explaining the folder organization

Output

Inform the user that the workspace has been reorganized:

• •List the new folder structure created
• •Provide a count of files moved and their destinations
• •Suggest next steps for navigating the reorganized workspace
• •Note any files that required manual review or decisions about placement
• •Ask the user if they have any organization preferences that they would like to use in the future, modifying this command