Sia-Code Skill

Local-first codebase intelligence with lexical-first search, multi-hop research, built-in project memory, and 12-language AST support.

Version: 0.5.0

Pinned CLI: Use uvx sia-code@0.5.0 (see opencode.json command /sia-code).

Core Concepts

What is Sia-Code?

•.sia-code/ directory containing index, config, and cache
•Lexical-first search: BM25 + FTS5 achieves 89.9% Recall@5 (outperforms hybrid!)
•AST-aware chunking for 12 languages (Python, JS/TS, Go, Rust, Java, C/C++, C#, Ruby, PHP)
•Built-in project memory: Timeline events, changelogs, technical decisions
•Optional semantic search via embeddings (requires API key)
•Multi-hop research for discovering code relationships
•Dependency-aware filtering (exclude or focus on vendored code)
•Portable index (17-25 MB per repo, 2x smaller than v0.3)

Index Structure:

code

.sia-code/
├── config.json       # Configuration
├── vectors.usearch   # HNSW vector index (optional)
├── index.db          # SQLite FTS5 (BM25 lexical search)
└── cache/            # Embedding cache

Environment Setup

OPENAI_API_KEY is OPTIONAL (only needed for semantic/hybrid search):

bash

source ~/.config/opencode/scripts/load-mcp-credentials-safe.sh

Without API key: Lexical search works perfectly (recommended approach, 89.9% Recall@5).

Quick Start

bash

# Initialize and build index
uvx sia-code init
uvx sia-code index .

# Search (lexical-only, RECOMMENDED)
uvx sia-code search --regex "def.*authenticate"

# Search (hybrid, requires OPENAI_API_KEY)
uvx sia-code search "authentication logic"

# Multi-hop research
uvx sia-code research "how does the API handle errors?"

# Check index health
uvx sia-code status

Indexing

Basic Indexing

bash

# Index current directory
uvx sia-code index .

Incremental Update

bash

# Re-index changed files only (fast)
uvx sia-code index --update

Full Rebuild

bash

# Delete existing index and rebuild from scratch
uvx sia-code index --clean

Skip Git Sync

bash

# Index without syncing git history (faster for quick updates)
uvx sia-code index . --no-git-sync

Parallel Indexing

For large codebases (100+ files), parallel indexing significantly speeds up initial indexing:

bash

# Enable parallel processing
uvx sia-code index . --parallel

# Control worker count (default: CPU count)
uvx sia-code index . --parallel --workers 4

When to use parallel:

•Initial indexing of 100+ files
•Large monorepos
•After major refactoring requiring full rebuild

Watch Mode

Auto-reindex on file changes:

bash

# Start watch mode (auto-reindex on changes)
uvx sia-code index --watch

# Custom debounce delay (default: 2 seconds)
uvx sia-code index --watch --debounce 3.0

Index Health & Maintenance

Check Status

bash

uvx sia-code status

Output example:

code

┃ Property        ┃ Value               ┃
┡━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━┩
│ Valid Chunks    │ 7,378               │
│ Stale Chunks    │ 200                 │
│ Staleness Ratio │ 2.6%                │
│ Health Status   │ 🟢 Healthy          │

When to Maintain Index

Condition	Action
`Health Status: 🟢 Healthy`	No action needed
`Health Status: 🟡 Degraded` (10-20% stale)	Run `uvx sia-code index --update` or `compact`
`Health Status: 🔴 Critical` (>20% stale)	Run `uvx sia-code index --clean`
After `git pull` with many changes	Run `uvx sia-code index --update`
After major refactoring	Run `uvx sia-code index --clean`

Compaction

Remove stale chunks to improve search quality and reduce index size:

bash

# Compact if >20% stale (default threshold)
uvx sia-code compact

# Compact only if >30% stale
uvx sia-code compact --threshold 0.3

# Force compaction regardless of threshold
uvx sia-code compact --force

Searching

Recommendation: Use lexical-only search (--regex) for best performance (89.9% Recall@5 on RepoEval benchmark).

Lexical Search (RECOMMENDED)

Pattern-based search using BM25 + FTS5:

bash

uvx sia-code search --regex "def.*login"
uvx sia-code search --regex "class.*Handler"
uvx sia-code search --regex "authenticate"

Why lexical-first?

•89.9% Recall@5 (vs 89.1% hybrid, 78.0% semantic-only)
•Works without API key
•Faster queries (~60ms vs ~80ms)
•Code has precise identifiers that benefit from exact matching

Hybrid Search (Default)

Combines BM25 lexical + semantic vector search:

bash

uvx sia-code search "authentication logic"
uvx sia-code search "error handling middleware"

Note: Requires OPENAI_API_KEY. Lexical-only (--regex) recommended instead.

Semantic-Only Search

Vector similarity search only (not recommended for code):

bash

uvx sia-code search --semantic-only "handle user login"

Limiting Results

bash

# Return specific number of results
uvx sia-code search "query" -k 20
uvx sia-code search "query" --limit 20

Dependency Filtering

Control whether results include dependency/vendored code (node_modules, vendor, etc.):

bash

# Search YOUR project code only (exclude dependencies)
uvx sia-code search "authentication" --no-deps

# Search ONLY dependencies (for debugging library behavior)
uvx sia-code search "jwt verify" --deps-only

# Include stale chunks in results (for code archaeology)
uvx sia-code search "deleted function" --no-filter

When to use each:

Flag	Use Case
`--no-deps`	Focus on your code; debugging project-specific logic; cleaner architecture review
`--deps-only`	Debug library behavior; understand how a dependency works; audit vendored code
`--no-filter`	Find recently deleted code; code archaeology; historical investigation

Output Formats

bash

# Plain text (default)
uvx sia-code search "query"

# JSON output (for parsing/automation)
uvx sia-code search "query" --format json

# Rich table
uvx sia-code search "query" --format table

# CSV (for spreadsheets)
uvx sia-code search "query" --format csv

# Save to file
uvx sia-code search "query" --output results.json

Multi-Hop Research

Automatically discover code relationships and build a complete picture:

Basic Research

bash

uvx sia-code research "how does the API handle errors?"
uvx sia-code research "what is the authentication flow?"

Controlling Depth

Control how deep the relationship traversal goes:

bash

# Shallow search (faster, 2 hops default)
uvx sia-code research "how does login work?"

# Deep architecture trace (3+ hops)
uvx sia-code research "how does auth middleware work?" --hops 3

# Control results per hop
uvx sia-code research "error flow" --limit 10

Call Graph Visualization

See what functions call what:

bash

uvx sia-code research "what calls the indexer?" --graph

Research Filtering

bash

# Include stale chunks (code archaeology)
uvx sia-code research "auth flow" --no-filter

Project Memory

New in 0.4.0: Built-in project memory for storing learnings, decisions, and tracking timeline events.

Search Past Learnings

Search through stored decisions and timeline events:

bash

uvx sia-code memory search "authentication"
uvx sia-code memory search "database migration" --type decision
uvx sia-code memory search "timeline" --type timeline -k 20

Store New Learning

Add decisions, procedures, or facts to project memory:

bash

# Store a procedure
uvx sia-code memory add-decision "Procedure: Always run tests before deploying" -d "Team workflow" -r "Reduce regressions"

# Store a fact
uvx sia-code memory add-decision "Fact: Module Y requires config Z" -d "Required configuration" -r "Runtime errors otherwise"

# Store a technical decision
uvx sia-code memory add-decision "Migrate from REST to GraphQL" -d "Need flexible queries" -r "Reduce overfetching" -a "REST, gRPC"

View Timeline & Decisions

bash

# List timeline events (from git commits)
uvx sia-code memory list --type timeline

# List stored decisions
uvx sia-code memory list --type decision

# List changelogs (from git tags)
uvx sia-code memory list --type changelog

# Limit number of items shown
uvx sia-code memory list --type timeline --limit 20

# Filter decisions by status
uvx sia-code memory list --type decision --status pending

# Output format
uvx sia-code memory list --type decision --format table

View Timeline (Dedicated Command)

New in 0.5.0 - dedicated timeline viewing with filtering:

bash

# Show recent timeline
uvx sia-code memory timeline

# Filter by date
uvx sia-code memory timeline --since 2024-01-01

# Filter by event type
uvx sia-code memory timeline --event-type merge
uvx sia-code memory timeline --event-type tag
uvx sia-code memory timeline --event-type major_change

# Filter by importance
uvx sia-code memory timeline --importance high

# Output formats
uvx sia-code memory timeline --format markdown
uvx sia-code memory timeline --format json

Sync from Git

Import timeline events and changelogs from git history:

bash

# Sync all git history
uvx sia-code memory sync-git

# Sync last 100 events
uvx sia-code memory sync-git --limit 100

# Sync events after git ref (e.g., last 50 commits)
uvx sia-code memory sync-git --since "HEAD~50"

# Preview without importing
uvx sia-code memory sync-git --dry-run

# Only tags or only merges
uvx sia-code memory sync-git --tags-only
uvx sia-code memory sync-git --merges-only

Decision Workflow

Track and approve/reject technical decisions:

bash

# Add a pending decision
uvx sia-code memory add-decision "Migrate to GraphQL" -d "Need flexible queries" -r "Reduce overfetching" -a "REST, gRPC"

# Approve decision (ID shown in list output)
uvx sia-code memory approve 1 -c architecture

# Reject decision
uvx sia-code memory reject 2

Generate Changelog

Generate changelog from stored memory:

bash

# Generate markdown changelog
uvx sia-code memory changelog --format markdown

# Export to file
uvx sia-code memory changelog --format markdown -o CHANGELOG.md

# Specific tag range
uvx sia-code memory changelog v1.0.0..v2.0.0

Export/Import Memory

Backup or share project memory:

bash

# Export to JSON
uvx sia-code memory export -o memory-backup.json

# Import from JSON
uvx sia-code memory import -i memory-backup.json

Interactive Mode

Live search with result navigation:

bash

# Hybrid interactive search
uvx sia-code interactive

# Lexical-only interactive search
uvx sia-code interactive --regex

# Limit results per query
uvx sia-code interactive -k 15

Features:

•Live search as you type
•Navigate results with arrow keys
•Preview code chunks
•Export results to file
•Press Ctrl+C or Ctrl+D to exit

Embedding Server (New in 0.5.0)

Share embedding models across multiple repos to save memory and improve startup time.

Start Server

bash

# Start daemon (backgrounds automatically)
uvx sia-code embed start

# Run in foreground (for debugging)
uvx sia-code embed start --foreground

# Custom idle timeout (default: 1 hour)
uvx sia-code embed start --idle-timeout 7200  # 2 hours

Auto-starts on demand: The daemon loads embedding models only when needed and shares them across all sia-code sessions, reducing memory usage and startup time.

Auto-unload: Models are automatically unloaded after idle timeout (default: 1 hour) to save memory, and reloaded on next request.

Check Status

bash

uvx sia-code embed status

Stop Server

bash

uvx sia-code embed stop

When to use:

•Multi-repo workflows (reduces memory from loading model per-repo)
•Frequent switching between projects
•CI/CD pipelines with multiple repos
•Required for hybrid/semantic search (lexical --regex search works without daemon)

Configuration

View Configuration

bash

# Show current configuration
uvx sia-code config show

# Show config file path
uvx sia-code config path

# Get specific value
uvx sia-code config get search.vector_weight

Set Configuration

bash

# Set value
uvx sia-code config set search.vector_weight 0.0
uvx sia-code config set chunking.max_chunk_size 1500
uvx sia-code config set embedding.enabled false

Configuration File

Located at .sia-code/config.json:

json

{
  "embedding": {
    "enabled": true,
    "model": "BAAI/bge-small-en-v1.5",
    "dimensions": 384
  },
  "search": {
    "vector_weight": 0.0,
    "default_limit": 10,
    "include_dependencies": true
  },
  "chunking": {
    "max_chunk_size": 1200,
    "min_chunk_size": 50,
    "merge_threshold": 0.8,
    "greedy_merge": true
  },
  "indexing": {
    "max_file_size_mb": 5,
    "exclude_patterns": [
      "node_modules/",
      "__pycache__/",
      ".git/",
      "venv/"
    ]
  },
  "summarization": {
    "enabled": false,
    "model": "google/flan-t5-base",
    "max_commits": 20
  }
}

Key Settings:

•search.vector_weight: 0.0 = lexical-only (RECOMMENDED!), 0.5 = hybrid, 1.0 = semantic-only
•embedding.enabled: Set to false to disable embeddings entirely (saves API costs)
•chunking.max_chunk_size: Maximum characters per chunk (default: 1200)
•indexing.exclude_patterns: Directories/files to exclude from indexing

Workflow Integration

At Task Start (AGENTS.md Pattern)

bash

# Check if index exists and is healthy
uvx sia-code status

# If not initialized:
uvx sia-code init
uvx sia-code index .

# If degraded (>10% stale):
uvx sia-code index --update

# Search past learnings
uvx sia-code memory search "[task description]"

During Code Exploration

bash

# Find where feature is implemented
uvx sia-code research "how does authentication work?"

# Find project-only patterns (exclude dependencies)
uvx sia-code search --regex "class.*Handler" --no-deps

# Lexical search for exact matches
uvx sia-code search --regex "def authenticate"

Two-Strike Rule Integration

After 2 failed fixes:

bash

uvx sia-code research "trace the error flow from [component]" --hops 3

Store the root cause:

bash

uvx sia-code memory add-decision "Root cause: [description] - Fix: [solution]"

Quick Reference

Task	Command
Setup
Initialize	`uvx sia-code init`
Initialize (preview)	`uvx sia-code init --dry-run`
Index codebase	`uvx sia-code index .`
Index (parallel)	`uvx sia-code index . --parallel`
Maintenance
Update index	`uvx sia-code index --update`
Full rebuild	`uvx sia-code index --clean`
Index (no git sync)	`uvx sia-code index . --no-git-sync`
Watch mode	`uvx sia-code index --watch`
Check health	`uvx sia-code status`
Compact index	`uvx sia-code compact`
Search
Lexical search (RECOMMENDED)	`uvx sia-code search --regex "pattern"`
Hybrid search	`uvx sia-code search "query"`
Semantic search	`uvx sia-code search --semantic-only "query"`
Project code only	`uvx sia-code search "query" --no-deps`
Dependencies only	`uvx sia-code search "query" --deps-only`
JSON output	`uvx sia-code search "query" --format json`
Research
Multi-hop research	`uvx sia-code research "question"`
Deep trace	`uvx sia-code research "question" --hops 3`
Call graph	`uvx sia-code research "question" --graph`
Memory
Search past learnings	`uvx sia-code memory search "query"`
Store decision/learning	`uvx sia-code memory add-decision "..."`
View timeline	`uvx sia-code memory timeline`
List timeline events	`uvx sia-code memory list --type timeline`
List decisions	`uvx sia-code memory list --type decision`
Sync from git	`uvx sia-code memory sync-git`
Generate changelog	`uvx sia-code memory changelog --format markdown`
Embedding
Start embed server	`uvx sia-code embed start`
Check embed status	`uvx sia-code embed status`
Stop embed server	`uvx sia-code embed stop`
Configuration
Show config	`uvx sia-code config show`
Get value	`uvx sia-code config get KEY`
Set value	`uvx sia-code config set KEY VALUE`
Other
Interactive mode	`uvx sia-code interactive`
Interactive (lexical)	`uvx sia-code interactive --regex`

Supported Languages

Full AST Support (12): Python, JavaScript, TypeScript, JSX, TSX, Go, Rust, Java, C, C++, C#, Ruby, PHP

Recognized but indexed as text: Kotlin, Groovy, Swift, Bash, Vue, Svelte

Not indexed: Markdown, YAML, JSON, etc. (use grep/ripgrep for these)

Troubleshooting

Common Issues

Error: Sia Code not initialized

•Cause: No .sia-code directory in project
•Solution: Run uvx sia-code init

Search returns unrelated results

•Cause: Index is stale (>10% degraded)
•Solution: Run uvx sia-code index --update or uvx sia-code compact

Too many dependency results

•Cause: Search includes node_modules/vendor code
•Solution: Use --no-deps flag

Indexing is slow

•Cause: Large codebase or many files
•Solution: Use --parallel flag, or add exclusions to config

No results for markdown/config files

•Cause: Sia-code only indexes code files (by design)
•Solution: Use grep or rg for text files

No API key warning (during hybrid search)

•This is normal - lexical search still works without API key
•Use --regex flag for pure lexical search (recommended)

Performance Notes

Index Size: 17-25 MB per repo (2x smaller than v0.3) Query Speed: ~60ms lexical, ~80ms hybrid Benchmark: 89.9% Recall@5 on RepoEval (1,600 queries, 8 repositories)

Notes

•Portable: .sia-code/ directory can be committed or shared
•API costs: Lexical search is FREE (no API calls); hybrid/semantic requires OpenAI API key
•Index location: Always project-local (not global)
•Lexical-first philosophy: BM25 outperforms hybrid for code search (+0.8 percentage points)
•Memory is git-centric: Timeline events come from commits, changelogs from tags