Please provide your institution's current F&A (indirect cost) rates:

1. On-campus Research rate: ___% (base: MTDC/TDC)
2. Off-campus Research rate: ___% (base: MTDC/TDC)
3. Instruction rate: ___% (base: MTDC/TDC)
4. Other Sponsored Activities rate: ___% (base: MTDC/TDC)
5. Industry/Commercial rates (if different): ___%
6. Clinical Trials rate (if applicable): ___%

Rate Agreement effective dates: From ___ to ___

Where to find this: 
- Your institution's Controller's Office or Cost Accounting website
- Office of Sponsored Programs rate information page
- Search "[Institution Name] F&A rates" or "indirect cost rates"

Please provide your institution's current fringe benefit rates:

Federal/On-Campus Rates:
- Faculty: ___%
- Staff: ___%
- Graduate Students (GSR/GRA): ___%
- Postdoctoral Researchers: ___%
- Temporary/Hourly: ___%
- Student Workers: ___%

Non-Federal Rates (if different): [same categories]

Effective fiscal year: FY____

Where to find this:
- Controller's Office or Budget Office website
- Proposal preparation guidelines
- Search "[Institution Name] fringe benefit rates"

Please provide your institution's current policy thresholds:

1. Equipment capitalization threshold: $______
   (Items above this are classified as equipment vs. supplies)

2. Subaward F&A threshold: First $______ per subaward included in MTDC
   (Federal standard is $25,000; some institutions have different rates)

3. Cost sharing policy: 
   [ ] Discouraged unless required
   [ ] Allowed with approval
   [ ] Other: _______________

4. Off-campus rate criteria:
   When does off-campus F&A rate apply? _______________

Where to find this:
- Sponsored Programs policy manual
- Proposal preparation guidelines
- Federal rate agreement documentation

Please describe your institution's proposal preparation workflow:

Stage 1: _____________ (Days before deadline: ___)
Stage 2: _____________ (Days before deadline: ___)
Stage 3: _____________ (Days before deadline: ___)
[Continue as needed...]

Internal submission deadline: ___ days before sponsor deadline
Final review/approval: ___ days before sponsor deadline

Key milestones:
- PI certification required: [ ] Yes [ ] No - Due: ___ days before
- Department approval required: [ ] Yes [ ] No - Due: ___ days before
- Dean/College approval required: [ ] Yes [ ] No - Due: ___ days before

Please provide key contacts for grant submissions:

Office of Sponsored Programs:
- General email: _______________
- Phone: _______________
- Website: _______________
- NIH-specific contact (if any): _______________
- NSF-specific contact (if any): _______________

Research Compliance:
- IRB (Human Subjects): _______________
- IACUC (Animal Research): _______________
- IBC (Biosafety): _______________
- Export Control: _______________

Budget/Rates:
- Controller's Office: _______________
- Cost Accounting: _______________

Other relevant offices: _______________

{
  "title": "Full title of the solicitation",
  "sponsor": "Funding agency name",
  "program": "Program or mechanism name",
  "deadlines": [
    {"type": "Letter of Intent", "date": "YYYY-MM-DD", "notes": "optional notes"},
    {"type": "Full Proposal", "date": "YYYY-MM-DD", "notes": "optional notes"}
  ],
  "eligibility": {
    "institution_types": ["R1 universities", "non-profits"],
    "pi_requirements": "PI eligibility requirements",
    "geographic_restrictions": "Any geographic restrictions or none",
    "other": "Any other eligibility notes"
  },
  "budget": {
    "max_total": "Maximum total budget",
    "max_per_year": "Maximum per year",
    "indirect_cost_policy": "F&A policy details",
    "cost_sharing_required": "Yes/No and details",
    "restrictions": ["Budget restrictions or special rules"]
  },
  "required_documents": ["List of all required documents and forms"],
  "page_limits": [
    {"document": "Document name", "limit": "Page limit"}
  ],
  "compliance_requirements": ["IRB", "IACUC", "Data Management Plan"],
  "special_requirements": ["Other important requirements"],
  "policy_flags": ["Policy conflicts with institutional rates"],
  "recommended_resources": ["Recommended contacts and resources"],
  "helpful_hints": ["Tips for preparing a strong proposal"]
}

const INSTITUTION_CONFIG = {
  name: "Institution Name",
  
  faRates: {
    onCampusResearch: { rate: 0.00, base: "MTDC" },
    offCampusResearch: { rate: 0.00, base: "MTDC" },
    instruction: { rate: 0.00, base: "MTDC" },
    otherSponsored: { rate: 0.00, base: "MTDC" },
    industryResearch: { rate: 0.00, base: "MTDC" },
    clinicalTrials: { rate: 0.00, base: "TDC" },
    effectiveDate: "YYYY-MM-DD",
    expirationDate: "YYYY-MM-DD"
  },
  
  fringeRates: {
    faculty: 0.00,
    staff: 0.00,
    graduateStudents: 0.00,
    postdocs: 0.00,
    temporary: 0.00,
    studentWorkers: 0.00,
    fiscalYear: "FY20XX"
  },
  
  policies: {
    equipmentThreshold: 5000,
    subawardMTDCThreshold: 25000,
    costSharingPolicy: "Discouraged unless required",
    offCampusCriteria: "When rent charged directly to project"
  },
  
  workflow: [
    { stage: 1, name: "Initial Notification", daysOffset: 0 },
    { stage: 2, name: "Solicitation Review", daysOffset: -30 },
    // ... additional stages
  ],
  
  contacts: {
    osp: { email: "", phone: "", website: "" },
    irb: { email: "", website: "" },
    iacuc: { email: "", website: "" },
    controller: { email: "", website: "" }
  }
};

// Business day subtraction function
const subtractBusinessDays = (date, days) => {
  const result = new Date(date);
  let remaining = Math.abs(days);
  const direction = days < 0 ? -1 : 1;
  while (remaining > 0) {
    result.setDate(result.getDate() + direction);
    if (result.getDay() !== 0 && result.getDay() !== 6) {
      remaining--;
    }
  }
  return result;
};

// Generate timeline from institution config
const generateTimeline = (deadlineDate, workflowStages) => {
  const today = new Date();
  today.setHours(0, 0, 0, 0);
  
  const milestones = workflowStages.map(stage => ({
    stage: stage.name,
    date: subtractBusinessDays(deadlineDate, Math.abs(stage.daysOffset)),
    daysOffset: stage.daysOffset
  }));
  
  // Filter to show only future milestones
  const futureMilestones = milestones.filter(m => m.date >= today);
  
  // Always add "Today" as starting point
  return [
    { stage: 'Initial Notification (Today)', date: today, isStart: true },
    ...futureMilestones
  ].sort((a, b) => a.date - b.date);
};

const detectPolicyConflicts = (sponsorPolicy, institutionConfig) => {
  const flags = [];
  
  // F&A rate conflicts
  if (sponsorPolicy.faCap && sponsorPolicy.faCap < institutionConfig.faRates.onCampusResearch.rate * 100) {
    flags.push(`Sponsor caps F&A at ${sponsorPolicy.faCap}% - below institutional rate of ${institutionConfig.faRates.onCampusResearch.rate * 100}%`);
  }
  
  // F&A base conflicts
  if (sponsorPolicy.faBase && sponsorPolicy.faBase !== institutionConfig.faRates.onCampusResearch.base) {
    flags.push(`Sponsor uses ${sponsorPolicy.faBase} base - institutional rate is ${institutionConfig.faRates.onCampusResearch.base}-based`);
  }
  
  // Cost sharing conflicts
  if (sponsorPolicy.voluntaryCostSharing && institutionConfig.policies.costSharingPolicy.includes("Discouraged")) {
    flags.push("Sponsor mentions voluntary cost sharing - check institutional policy before committing");
  }
  
  // Equipment threshold conflicts
  if (sponsorPolicy.equipmentThreshold && sponsorPolicy.equipmentThreshold !== institutionConfig.policies.equipmentThreshold) {
    flags.push(`Sponsor equipment threshold ($${sponsorPolicy.equipmentThreshold}) differs from institutional threshold ($${institutionConfig.policies.equipmentThreshold})`);
  }
  
  // Subaward threshold conflicts
  if (sponsorPolicy.subawardThreshold && sponsorPolicy.subawardThreshold !== institutionConfig.policies.subawardMTDCThreshold) {
    flags.push(`Sponsor subaward F&A threshold differs from institutional policy`);
  }
  
  return flags;
};

const generateChecklistText = (data, institutionConfig) => {
  let text = `GRANT PROPOSAL CHECKLIST\n`;
  text += `${data.title}\n`;
  text += `Sponsor: ${data.sponsor}\n`;
  text += `Institution: ${institutionConfig.name}\n`;
  text += `Generated: ${new Date().toLocaleDateString()}\n`;
  text += `\n${'='.repeat(80)}\n\n`;

  // Policy Flags
  if (data.policy_flags?.length > 0) {
    text += `⚠️  POLICY CONSIDERATIONS:\n`;
    data.policy_flags.forEach(flag => {
      text += `  ! ${flag}\n`;
    });
    text += `\n`;
  }

  // Deadlines
  text += `DEADLINES:\n`;
  data.deadlines.forEach(d => {
    text += `  [ ] ${d.type}: ${d.date}${d.notes ? ` (${d.notes})` : ''}\n`;
  });
  text += `\n`;

  // Budget Considerations
  text += `BUDGET CONSIDERATIONS:\n`;
  text += `  [ ] Review budget maximum: ${data.budget.max_total}\n`;
  text += `  [ ] Confirm F&A policy: ${data.budget.indirect_cost_policy}\n`;
  text += `  [ ] Cost sharing: ${data.budget.cost_sharing_required}\n`;
  text += `  [ ] Verify institutional F&A rate applies (${institutionConfig.faRates.onCampusResearch.rate * 100}% on-campus research)\n`;
  text += `  [ ] Use current fringe rates\n`;
  text += `\n`;

  // Required Documents
  text += `REQUIRED DOCUMENTS:\n`;
  data.required_documents.forEach(doc => {
    text += `  [ ] ${doc}\n`;
  });
  text += `\n`;

  // Compliance
  if (data.compliance_requirements?.length > 0) {
    text += `COMPLIANCE REQUIREMENTS:\n`;
    data.compliance_requirements.forEach(req => {
      text += `  [ ] ${req}\n`;
    });
    text += `\n`;
  }

  // Workflow Stages
  text += `WORKFLOW STAGES:\n`;
  institutionConfig.workflow.forEach(stage => {
    text += `  [ ] Stage ${stage.stage}: ${stage.name}\n`;
  });
  text += `\n`;

  // Key Contacts
  text += `KEY CONTACTS:\n`;
  if (institutionConfig.contacts.osp.email) {
    text += `  OSP: ${institutionConfig.contacts.osp.email} | ${institutionConfig.contacts.osp.phone}\n`;
  }
  if (institutionConfig.contacts.irb.website) {
    text += `  IRB: ${institutionConfig.contacts.irb.website}\n`;
  }
  if (institutionConfig.contacts.iacuc.website) {
    text += `  IACUC: ${institutionConfig.contacts.iacuc.website}\n`;
  }
  if (institutionConfig.contacts.controller.website) {
    text += `  Controller/Rates: ${institutionConfig.contacts.controller.website}\n`;
  }
  text += `\n`;

  // Current Rates Reference
  text += `CURRENT INSTITUTIONAL RATES (${institutionConfig.fringeRates.fiscalYear}):\n`;
  text += `  F&A: ${institutionConfig.faRates.onCampusResearch.rate * 100}% on-campus research (${institutionConfig.faRates.onCampusResearch.base})\n`;
  text += `  Fringe: Faculty ${institutionConfig.fringeRates.faculty * 100}%, Staff ${institutionConfig.fringeRates.staff * 100}%, GSR ${institutionConfig.fringeRates.graduateStudents * 100}%\n`;
  text += `  Equipment threshold: $${institutionConfig.policies.equipmentThreshold.toLocaleString()}\n`;
  text += `  Subaward MTDC threshold: First $${institutionConfig.policies.subawardMTDCThreshold.toLocaleString()} per subaward\n`;

  return text;
};

import React, { useState } from 'react';
import { Upload, FileText, Calendar, DollarSign, CheckSquare, 
         AlertTriangle, Download, Copy, Edit, Settings } from 'lucide-react';

export default function NOFOProcessor() {
  const [file, setFile] = useState(null);
  const [url, setUrl] = useState('');
  const [inputType, setInputType] = useState('pdf');
  const [processing, setProcessing] = useState(false);
  const [results, setResults] = useState(null);
  const [error, setError] = useState(null);
  const [editing, setEditing] = useState(false);
  const [editedResults, setEditedResults] = useState(null);
  const [selectedDeadlineIndex, setSelectedDeadlineIndex] = useState(0);
  const [institutionConfig, setInstitutionConfig] = useState(null);
  const [showConfigModal, setShowConfigModal] = useState(false);
  
  // ... implementation
}

const analyzeContent = async (type, data, institutionConfig) => {
  const analysisPrompt = buildAnalysisPrompt(institutionConfig);
  
  let messageContent;
  if (type === 'pdf') {
    messageContent = [
      {
        type: 'document',
        source: { type: 'base64', media_type: 'application/pdf', data: data }
      },
      { type: 'text', text: analysisPrompt }
    ];
  } else {
    messageContent = [
      { type: 'text', text: `Fetch and analyze: ${data}\n\n${analysisPrompt}` }
    ];
  }

  const response = await fetch('https://api.anthropic.com/v1/messages', {
    method: 'POST',
    headers: { 'Content-Type': 'application/json' },
    body: JSON.stringify({
      model: 'claude-sonnet-4-20250514',
      max_tokens: 4000,
      messages: [{ role: 'user', content: messageContent }]
    })
  });
  
  const responseData = await response.json();
  let cleanedText = responseData.content[0].text.trim();
  cleanedText = cleanedText.replace(/```json\n?/g, '').replace(/```\n?$/g, '');
  return JSON.parse(cleanedText);
};

const buildAnalysisPrompt = (config) => {
  return `Analyze this grant solicitation and extract information.

INSTITUTIONAL CONTEXT:
Institution: ${config.name}
Current F&A Rates:
- On-campus Research: ${config.faRates.onCampusResearch.rate * 100}% ${config.faRates.onCampusResearch.base}
- Off-campus: ${config.faRates.offCampusResearch.rate * 100}% ${config.faRates.offCampusResearch.base}
- Instruction: ${config.faRates.instruction.rate * 100}% ${config.faRates.instruction.base}

Fringe Benefit Rates (${config.fringeRates.fiscalYear}):
- Faculty: ${config.fringeRates.faculty * 100}%
- Staff: ${config.fringeRates.staff * 100}%
- Graduate Students: ${config.fringeRates.graduateStudents * 100}%

Key Policies:
- Equipment threshold: $${config.policies.equipmentThreshold}
- Subaward F&A: First $${config.policies.subawardMTDCThreshold} per subaward
- Cost sharing: ${config.policies.costSharingPolicy}

IMPORTANT: Check if sponsor's F&A policy conflicts with institutional rates.

Respond ONLY with valid JSON (no markdown, no preamble):
{
  "title": "Full title of the solicitation",
  "sponsor": "Funding agency name",
  "program": "Program or mechanism name",
  "deadlines": [
    {"type": "Type", "date": "YYYY-MM-DD", "notes": "optional"}
  ],
  "eligibility": {
    "institution_types": [],
    "pi_requirements": "",
    "geographic_restrictions": "",
    "other": ""
  },
  "budget": {
    "max_total": "",
    "max_per_year": "",
    "indirect_cost_policy": "",
    "cost_sharing_required": "",
    "restrictions": []
  },
  "required_documents": [],
  "page_limits": [{"document": "", "limit": ""}],
  "compliance_requirements": [],
  "special_requirements": [],
  "policy_flags": [],
  "recommended_resources": [],
  "helpful_hints": []
}`;
};

const processPDF = async (file) => {
  const base64Data = await new Promise((resolve, reject) => {
    const reader = new FileReader();
    reader.onload = () => resolve(reader.result.split(',')[1]);
    reader.onerror = reject;
    reader.readAsDataURL(file);
  });
  return analyzeContent('pdf', base64Data, institutionConfig);
};

const copyToClipboard = (text) => {
  if (navigator.clipboard && navigator.clipboard.writeText) {
    navigator.clipboard.writeText(text)
      .then(() => alert('Copied!'))
      .catch(() => fallbackCopy(text));
  } else {
    fallbackCopy(text);
  }
};

const fallbackCopy = (text) => {
  const textArea = document.createElement('textarea');
  textArea.value = text;
  textArea.style.position = 'fixed';
  textArea.style.left = '-999999px';
  document.body.appendChild(textArea);
  textArea.select();
  document.execCommand('copy');
  document.body.removeChild(textArea);
};

const InstitutionConfigModal = ({ config, onSave, onClose }) => (
  <div className="fixed inset-0 bg-black bg-opacity-50 flex items-center justify-center z-50">
    <div className="bg-white rounded-lg p-6 max-w-2xl max-h-[90vh] overflow-y-auto">
      <h2 className="text-xl font-bold mb-4">Institution Configuration</h2>
      
      <div className="space-y-4">
        <div>
          <label className="block font-semibold mb-1">Institution Name</label>
          <input type="text" className="w-full border rounded p-2" />
        </div>
        
        <div className="border-t pt-4">
          <h3 className="font-semibold mb-2">F&A Rates</h3>
          {/* Rate input fields */}
        </div>
        
        <div className="border-t pt-4">
          <h3 className="font-semibold mb-2">Fringe Benefit Rates</h3>
          {/* Fringe rate input fields */}
        </div>
        
        <div className="border-t pt-4">
          <h3 className="font-semibold mb-2">Policy Thresholds</h3>
          {/* Policy threshold input fields */}
        </div>
        
        <div className="border-t pt-4">
          <h3 className="font-semibold mb-2">Key Contacts</h3>
          {/* Contact input fields */}
        </div>
      </div>
      
      <div className="flex justify-end gap-2 mt-6">
        <button onClick={onClose} className="px-4 py-2 border rounded">Cancel</button>
        <button onClick={onSave} className="px-4 py-2 bg-blue-600 text-white rounded">Save</button>
      </div>
    </div>
  </div>
);

// Warning box for policy conflicts
<div className="bg-amber-50 border border-amber-300 rounded-lg p-4">

// Timeline milestone
<div className="flex items-center gap-3 p-3 bg-blue-50 rounded-lg">

// Section card
<div className="bg-white rounded-lg shadow-lg p-6 mb-6">

// Action button
<button className="flex items-center gap-2 bg-indigo-600 text-white py-2 px-4 rounded-lg hover:bg-indigo-700">

// Configuration button
<button className="flex items-center gap-2 bg-gray-600 text-white py-2 px-4 rounded-lg hover:bg-gray-700">
  <Settings className="w-4 h-4" />
  Configure Institution
</button>