Review LaTeX Manuscript Structure

Review a LaTeX manuscript for structural integrity: orphaned references, missing input files, cross-reference consistency, and appendix completeness.

Steps

1. •

   Read CLAUDE.md to find the manuscript location and bibliography file paths for this project.

2. •

   Identify manuscript to review:

   • •If $ARGUMENTS is a specific .tex filename: review that file
   • •Otherwise: review the primary manuscript listed in CLAUDE.md
3. •

   Read the full manuscript and extract all structural elements:

   REFERENCES: Find all \ref{...} and \label{...} — flag any \ref without a matching \label CITATIONS: Find all \cite{...}, \citet{...}, \citep{...} — cross-check against the project's .bib files INPUTS: Find all \input{...} and \includegraphics{...} — verify each referenced file exists on disk FOOTNOTES: Check footnotes for dangling references or incomplete text APPENDIX: Verify that main-text references to appendix sections (e.g., "Appendix A", "Table A1") have matching \label targets in the appendix

4. •

   Check section structure:

   • •All \section, \subsection have content (not empty)
   • •No orphaned \begin{...} without matching \end{...}
   • •Table and figure environments have both \caption and \label
   • •No duplicate \label keys
5. •

   Check bibliography completeness:

   • •Every \cite key exists in one of the project's .bib files
   • •Flag .bib entries with missing required fields (author, title, year)
   • •Flag potential typos in citation keys (fuzzy match near-misses)
6. •

   Produce a detailed report listing every finding with:

   • •Location (line number)
   • •Issue type (ORPHAN_REF | MISSING_FILE | MISSING_CITE | DUPLICATE_LABEL | EMPTY_SECTION | UNCLOSED_ENV)
   • •Severity (Critical / Major / Minor)
   • •Description of the problem
7. •

   Save report to quality_reports/manuscript_review.md

8. •

   IMPORTANT: Do NOT edit any source files. Only produce the report. Fixes are applied after user review.

9. •

   Present summary to the user:

   • •Total issues by severity
   • •Most critical problems highlighted
   • •List of missing files (if any)