AgentSkillsCN

east-py-datascience

针对 East 语言(TypeScript 类型)的数据科学和机器学习平台功能。当编写需要优化(MADS、Optuna、SimAnneal、Scipy)、机器学习(XGBoost、LightGBM、NGBoost、Torch MLP、Lightning、GP)、ML 工具(Sklearn 预处理、度量、拆分)、共形预测(MAPIE)或模型可解释性(SHAP)的 East 程序时使用。触发条件:(1) 使用 @elaraai/east-py-datascience 编写 East 程序,(2) 使用 MADS 进行无导数优化,(3) 使用 Optuna 进行贝叶斯优化,(4) 使用 SimAnneal 进行离散/组合优化,(5) 使用 XGBoost 或 LightGBM 进行梯度提升,(6) 使用 NGBoost 或 GP 进行概率预测,(7) 使用 Torch MLP 或 Lightning 进行神经网络,(8) 使用 Sklearn 进行数据预处理和度量,(9) 使用 MAPIE 进行共形预测区间,(10) 使用 Shap 进行模型可解释性。

SKILL.md
--- frontmatter
name: east-py-datascience
description: "Data science and machine learning platform functions for the East language (TypeScript types). Use when writing East programs that need optimization (MADS, Optuna, SimAnneal, Scipy), machine learning (XGBoost, LightGBM, NGBoost, Torch MLP, Lightning, GP), ML utilities (Sklearn preprocessing, metrics, splits), conformal prediction (MAPIE), or model explainability (SHAP). Triggers for: (1) Writing East programs with @elaraai/east-py-datascience, (2) Derivative-free optimization with MADS, (3) Bayesian optimization with Optuna, (4) Discrete/combinatorial optimization with SimAnneal, (5) Gradient boosting with XGBoost or LightGBM, (6) Probabilistic predictions with NGBoost or GP, (7) Neural networks with Torch MLP or Lightning, (8) Data preprocessing and metrics with Sklearn, (9) Conformal prediction intervals with MAPIE, (10) Model explainability with Shap."

East Data Science

Data science and machine learning platform functions for the East language. Provides optimization, ML models, preprocessing, and explainability.

Quick Start

typescript
import { East, FloatType, variant } from "@elaraai/east";
import { MADS } from "@elaraai/east-py-datascience";

// Define objective function
const objective = East.function([MADS.Types.VectorType], FloatType, ($, x) => {
    const x0 = $.let(x.get(0n));
    const x1 = $.let(x.get(1n));
    return $.return(x0.multiply(x0).add(x1.multiply(x1)));
});

// Optimize
const optimize = East.function([], MADS.Types.ResultType, $ => {
    const x0 = $.let([0.5, 0.5]);
    const bounds = $.let({ lower: [-1.0, -1.0], upper: [1.0, 1.0] });
    const config = $.let({
        max_bb_eval: variant('some', 100n),
        display_degree: variant('some', 0n),
        direction_type: variant('none', null),
        initial_mesh_size: variant('none', null),
        min_mesh_size: variant('none', null),
        seed: variant('some', 42n),
    });
    return $.return(MADS.optimize(objective, x0, bounds, variant('none', null), config));
});

Decision Tree: Which Module to Use

code
Task → What do you need?
    │
    ├─ MADS (derivative-free continuous optimization)
    │   └─ .optimize()
    │
    ├─ Optuna (Bayesian hyperparameter tuning)
    │   └─ .optimize()
    │
    ├─ SimAnneal (discrete/combinatorial optimization)
    │   └─ .optimize(), .optimizePermutation(), .optimizeSubset()
    │
    ├─ ALNS (adaptive large neighborhood search)
    │   └─ .optimize([SolutionType], initial, objective, destroys, repairs, config)
    │   └─ Generic over solution type S - define your own struct
    │
    ├─ Scipy
    │   ├─ Optimization → .optimizeMinimize(), .optimizeMinimizeQuadratic(), .optimizeDualAnnealing()
    │   ├─ Statistics → .statsDescribe(), .statsPearsonr(), .statsSpearmanr(), .statsPercentile(), .statsIqr(), .statsMedian(), .statsMad(), .statsRobust()
    │   ├─ Curve Fitting → .curveFit()
    │   └─ Interpolation → .interpolate1dFit(), .interpolate1dPredict()
    │
    ├─ XGBoost (gradient boosting)
    │   ├─ Train → .trainRegressor(), .trainClassifier(), .trainQuantile()
    │   └─ Predict → .predict(), .predictClass(), .predictProba(), .predictQuantile()
    │
    ├─ LightGBM (fast gradient boosting)
    │   ├─ Train → .trainRegressor(), .trainClassifier()
    │   └─ Predict → .predict(), .predictClass(), .predictProba()
    │
    ├─ NGBoost (probabilistic gradient boosting)
    │   ├─ Train → .trainRegressor()
    │   └─ Predict → .predict(), .predictDist()
    │
    ├─ Torch (neural networks)
    │   ├─ Train → .mlpTrain(), .mlpTrainMulti()
    │   ├─ Predict → .mlpPredict(), .mlpPredictMulti()
    │   └─ Embeddings → .mlpEncode(), .mlpDecode()
    │
    ├─ Lightning (PyTorch Lightning neural networks)
    │   ├─ Train → .train(X, y, config, masks, group_weights, conditions)
    │   ├─ Predict → .predict(model, X, masks, conditions)
    │   ├─ Embeddings → .encode(), .decode(), .decodeConditional() (autoencoder only)
    │   ├─ Architectures:
    │   │   ├─ mlp: simple feedforward
    │   │   ├─ autoencoder: encoder → latent → decoder
    │   │   ├─ conv1d: 1D convolutional autoencoder (temporal)
    │   │   ├─ sequential: LSTM/GRU autoencoder (temporal)
    │   │   └─ transformer: attention-based autoencoder (temporal)
    │   ├─ Output modes:
    │   │   ├─ regression: MSE loss
    │   │   ├─ binary: BCE loss, per-position pos_weights (VectorType), masks
    │   │   └─ multi_head: N independent CE heads, per-head class_weights, masks
    │   ├─ Conditional generation: condition_dim in temporal architectures
    │   └─ Features: early stopping, gradient clipping, epoch callbacks, group_weights
    │
    ├─ GP (Gaussian Process regression)
    │   ├─ Train → .train()
    │   └─ Predict → .predict(), .predictStd()
    │
    ├─ MAPIE (conformal prediction intervals)
    │   ├─ Regression → .trainConformalRegressor(), .trainCQR()
    │   ├─ Classification → .trainConformalClassifier()
    │   ├─ Predict → .predictInterval(), .predictSet()
    │   └─ SHAP integration → .uncertaintyPredictorRegressor(), .uncertaintyPredictorClassifier()
    │
    ├─ Sklearn (preprocessing & metrics)
    │   ├─ Splitting (with stratification and rare class filtering) → .trainTestSplit(), .trainValTestSplit()
    │   ├─ Scaling → .standardScalerFit/Transform(), .minMaxScalerFit/Transform(), .robustScalerFit/Transform()
    │   ├─ Encoding → .labelEncoderFit/Transform/InverseTransform(), .ordinalEncoderFit/Transform()
    │   ├─ Class weights → .computeClassWeight()
    │   ├─ Regression metrics → .computeMetrics(), .computeMetricsMulti()
    │   ├─ Classification metrics → .computeClassificationMetrics(), .computeClassificationMetricsMulti()
    │   ├─ Probability metrics → .rocAucScore(), .logLoss(), .confusionMatrix()
    │   └─ Multi-target → .regressorChainTrain(), .regressorChainPredict()
    │
    └─ Shap (model explainability)
        ├─ Create → .treeExplainerCreate() (XGBoost only), .kernelExplainerCreate() (any model)
        ├─ Compute → .computeValues(), .featureImportance()
        └─ Supports → TreeExplainer: XGBoost; KernelExplainer: XGBoost, LightGBM, NGBoost, GP, Torch, RegressorChain, MAPIE

Common Types

TypeDefinitionDescription
VectorTypeArrayType(FloatType)1D array of floats (e.g., [1.0, 2.0, 3.0])
MatrixTypeArrayType(ArrayType(FloatType))2D array of floats (e.g., [[1.0, 2.0], [3.0, 4.0]])
LabelVectorTypeArrayType(IntegerType)Class labels as integers (e.g., [0n, 1n, 0n, 2n])
ModelBlobTypeBlobTypeSerialized model (opaque, pass to predict functions)

Reference Documentation

  • API Reference - Complete function signatures, types, and config options
  • Examples - Working code examples by use case

Available Modules

ModuleImportPurpose
MADSimport { MADS } from "@elaraai/east-py-datascience"Derivative-free blackbox optimization
Optunaimport { Optuna } from "@elaraai/east-py-datascience"Bayesian optimization (hyperparameter tuning)
SimAnnealimport { SimAnneal } from "@elaraai/east-py-datascience"Simulated annealing (permutation/subset)
ALNSimport { ALNS } from "@elaraai/east-py-datascience"Adaptive Large Neighborhood Search (generic over solution type)
Scipyimport { Scipy } from "@elaraai/east-py-datascience"Statistics, optimization, interpolation
XGBoostimport { XGBoost } from "@elaraai/east-py-datascience"Gradient boosting (regression/classification/quantile)
LightGBMimport { LightGBM } from "@elaraai/east-py-datascience"Fast gradient boosting
NGBoostimport { NGBoost } from "@elaraai/east-py-datascience"Probabilistic gradient boosting
Torchimport { Torch } from "@elaraai/east-py-datascience"Neural networks (MLP)
Lightningimport { Lightning } from "@elaraai/east-py-datascience"PyTorch Lightning neural networks
GPimport { GP } from "@elaraai/east-py-datascience"Gaussian Process regression
MAPIEimport { MAPIE } from "@elaraai/east-py-datascience"Conformal prediction intervals
Sklearnimport { Sklearn } from "@elaraai/east-py-datascience"Preprocessing, metrics, data splitting
Shapimport { Shap } from "@elaraai/east-py-datascience"Model explainability (SHAP values)

Accessing Types

typescript
import { MADS, Optuna, Sklearn, XGBoost, ALNS } from "@elaraai/east-py-datascience";

// Access types via Module.Types.TypeName
MADS.Types.VectorType          // ArrayType(FloatType)
MADS.Types.BoundsType          // StructType({ lower, upper })
MADS.Types.ResultType          // StructType({ x_best, f_best, ... })

Optuna.Types.ParamSpaceType    // Parameter definition
Optuna.Types.StudyResultType   // Optimization result

ALNS.Types.ConfigType          // ALNS configuration
ALNS.Types.ResultType          // Result with "S" placeholder for solution type

Sklearn.Types.SplitConfigType  // Train/test split config
XGBoost.Types.ModelBlobType    // Trained model

Common Patterns

Train and Predict

typescript
// 1. Prepare data
const X = $.let([[...], [...], ...]);
const y = $.let([...]);

// 2. Configure and train
const config = $.let({ /* options with variant('some', value) or variant('none', null) */ });
const model = $.let(Module.train(X, y, config));

// 3. Predict
const predictions = $.let(Module.predict(model, X_test));

Optimization

typescript
// 1. Define objective function
const objective = East.function([VectorType], FloatType, ($, x) => {
    // compute and return objective value
});

// 2. Set bounds and config
const bounds = $.let({ lower: [...], upper: [...] });
const config = $.let({ /* options */ });

// 3. Optimize
const result = $.let(Module.optimize(objective, x0, bounds, config));
// result.x_best, result.f_best