Better Auth + FastAPI JWT Bridge

Implement production-ready JWT authentication between Better Auth (Next.js) and FastAPI using JWKS verification for secure, stateless authentication.

Architecture

User Login (Frontend)
    ↓
Better Auth → Issues JWT Token
    ↓
Frontend API Request → Authorization: Bearer <token>
    ↓
FastAPI Backend → Verifies JWT with JWKS → Returns filtered data

Quick Start Workflow

Step 1: Enable JWT in Better Auth (Frontend)

// lib/auth.ts
import { betterAuth } from "better-auth"
import { jwt } from "better-auth/plugins"

export const auth = betterAuth({
    plugins: [jwt()],  // Enables JWT + JWKS endpoint
    // ... other config
})

Database Migration Required:

After adding JWT plugin, run migrations to create required tables:

# Next.js (Better Auth CLI)
npx @better-auth/cli migrate

⚠️ IMPORTANT - Two Separate Tables Required:

1. •

   session table must have token column (core Better Auth requirement)

   • •Error: column "token" of relation "session" does not exist
   • •Fix: See Database Schema Issues
2. •

   jwks table must exist (JWT plugin requirement)

   • •Error: relation "jwks" does not exist
   • •Fix: See Database Schema Issues

These are separate migrations. The JWT plugin creates the jwks table but does NOT modify the session table.

Step 2: Verify JWKS Endpoint

Test the JWKS endpoint is working:

python scripts/verify_jwks.py http://localhost:3000/api/auth/jwks

Step 3: Implement Backend Verification

Copy templates from assets/ to your FastAPI project:

• •assets/jwt_verification.py → backend/app/auth/jwt_verification.py
• •assets/auth_dependencies.py → backend/app/auth/dependencies.py

Install dependencies:

pip install fastapi python-jose[cryptography] pyjwt cryptography httpx

Step 4: Protect API Routes

from app.auth.dependencies import verify_user_access

@router.get("/{user_id}/tasks")
async def get_tasks(
    user_id: str,
    user: dict = Depends(verify_user_access)
):
    # user_id is verified to match authenticated user
    return get_user_tasks(user_id)

Step 5: Configure Frontend API Client

Copy assets/api_client.ts to frontend/lib/api-client.ts and use:

import { getTasks, createTask } from "@/lib/api-client"

const tasks = await getTasks(userId)

⚠️ React Component Pattern:

Better Auth does NOT provide a useSession() hook. Use authClient.getSession() with useEffect:

import { useState, useEffect } from "react"
import { authClient } from "@/lib/auth-client"

function MyComponent() {
  const [user, setUser] = useState(null)

  useEffect(() => {
    async function loadSession() {
      const session = await authClient.getSession()
      if (session?.data?.user) {
        setUser(session.data.user)
      }
    }
    loadSession()
  }, [])

  return <div>Welcome {user?.name}</div>
}

See Frontend Integration Issues for complete examples.

Better Auth UUID Integration (Hybrid ID Architecture)

Problem Solved: Better Auth uses String IDs internally, but applications often need UUID for type consistency across API routes and database foreign keys.

Solution: Hybrid ID approach - User table has both id (String, Better Auth requirement) and uuid (UUID, application use).

Database Schema

CREATE TABLE "user" (
    id VARCHAR PRIMARY KEY,              -- Better Auth String ID
    uuid UUID UNIQUE NOT NULL,           -- Application UUID ⭐
    email VARCHAR UNIQUE NOT NULL,
    "emailVerified" BOOLEAN DEFAULT FALSE,
    name VARCHAR,
    "createdAt" TIMESTAMP NOT NULL,
    "updatedAt" TIMESTAMP NOT NULL
);

-- UUID auto-generated by database
ALTER TABLE "user" ALTER COLUMN uuid SET DEFAULT gen_random_uuid();

-- All foreign keys point to user.uuid
CREATE TABLE tasks (
    id UUID PRIMARY KEY,
    user_id UUID REFERENCES "user"(uuid) ON DELETE CASCADE,  -- ⭐ FK to uuid
    title VARCHAR NOT NULL,
    ...
);

Frontend Configuration (Better Auth)

Add UUID generation hook and JWT custom claim:

// lib/auth.ts
import { betterAuth } from "better-auth"
import { jwt } from "better-auth/plugins"
import { Pool } from "pg"

const pool = new Pool({ connectionString: process.env.DATABASE_URL })

export const auth = betterAuth({
  database: pool,

  // Hook to fetch database-generated UUID
  hooks: {
    user: {
      created: async ({ user }) => {
        const result = await pool.query(
          'SELECT uuid FROM "user" WHERE id = $1',
          [user.id]
        )
        const uuid = result.rows[0]?.uuid
        return { ...user, uuid }
      }
    }
  },

  // Include UUID in JWT payload
  plugins: [
    jwt({
      algorithm: "EdDSA",
      async jwt(user, session) {
        return {
          uuid: user.uuid,  // ⭐ Custom claim for backend
        }
      },
    }),
  ],
})

Backend Pattern (FastAPI)

Extract UUID from JWT custom claim (not sub):

# backend/app/auth/dependencies.py
from uuid import UUID

async def get_current_user(token: str = Depends(oauth2_scheme)) -> User:
    payload = verify_jwt_token(token)

    # Extract UUID from custom claim (not 'sub')
    user_uuid_str = payload.get("uuid")  # ⭐
    user_uuid = UUID(user_uuid_str)

    # Query by UUID
    user = await session.execute(
        select(User).where(User.uuid == user_uuid)
    )
    return user.scalar_one_or_none()

async def verify_user_match(
    user_id: UUID,  # From URL path
    current_user: User = Depends(get_current_user)
) -> User:
    # Compare UUIDs (not String IDs)
    if current_user.uuid != user_id:
        raise HTTPException(403, "Not authorized")
    return current_user

Key Pattern: Always query by User.uuid and validate against UUID from JWT custom claim.

Key Components

1. JWKS Verification Flow

1. •Fetch JWKS (cached) from Better Auth endpoint
2. •Extract kid (key ID) from JWT token header
3. •Find matching public key in JWKS by kid
4. •Verify signature using Ed25519 public key
5. •Validate claims (issuer, audience, expiration)
6. •Extract user info from payload (sub claim)

2. User Isolation Pattern

Always verify user_id from JWT matches user_id in URL:

if current_user["user_id"] != user_id:
    raise HTTPException(status_code=403, detail="Not authorized")

This prevents users from accessing other users' data.

3. JWT Payload Structure (Updated with UUID Integration)

{
  "sub": "user_abc123",       // Better Auth String ID
  "uuid": "a1b2c3d4-e5f6...", // Application UUID (custom claim) ⭐
  "email": "user@example.com",
  "name": "User Name",
  "iat": 1234567890,          // Issued at
  "exp": 1234567890,          // Expiration
  "iss": "http://localhost:3000",
  "aud": "http://localhost:3000"
}

Important: The uuid custom claim is used for backend user identification and database queries. Better Auth manages users with String IDs (sub), while the application uses UUIDs (uuid) for type consistency.

Environment Configuration

Frontend (.env.local):

BETTER_AUTH_SECRET="min-32-chars-secret"
BETTER_AUTH_URL="http://localhost:3000"
NEXT_PUBLIC_API_URL="http://localhost:8000"

Backend (.env):

BETTER_AUTH_URL="http://localhost:3000"
DATABASE_URL="postgresql://..."

Testing & Validation

Test JWKS Endpoint

python scripts/verify_jwks.py http://localhost:3000/api/auth/jwks

Expected output shows public keys with kid, kty, crv, and x fields.

Test JWT Verification

python scripts/test_jwt_verification.py \
  --jwks-url http://localhost:3000/api/auth/jwks \
  --token "eyJhbGci..."

Troubleshooting

Authentication Issues

Frontend-Backend Integration Issues (NEW - 2026-01-02)

📚 Critical Reading: See Frontend-Backend Integration Issues section in troubleshooting guide for detailed fixes with code examples. This section documents 8 critical issues discovered during implementation and their resolutions.

Key Learnings:

1. •Always read backend Pydantic schemas before writing frontend types
2. •Handle optional fields with null checks and defaults
3. •Use controlled components for pre-filled forms
4. •Match field names exactly between frontend and backend
5. •Test with actual backend responses, not mocked data

See references/troubleshooting.md for detailed solutions and prevention strategies.

Advanced Topics

JWKS Caching Strategy

The implementation uses @lru_cache to cache JWKS responses:

• •Cache invalidated if token has unknown kid
• •Public keys rarely change (safe to cache)
• •Reduces network calls to Better Auth

See references/jwks-approach.md for implementation details.

Security Checklist

Before production:

• •✅ HTTPS only for all API calls
• •✅ Token expiration validated
• •✅ Issuer/audience claims verified
• •✅ User ID authorization enforced
• •✅ CORS properly configured
• •✅ Error messages don't leak sensitive info

See references/security-checklist.md for complete list.

Resources

scripts/

• •verify_jwks.py - Test JWKS endpoint availability
• •test_jwt_verification.py - Validate JWT token verification

references/

• •jwks-approach.md - Detailed JWKS implementation guide
• •security-checklist.md - Production security requirements
• •troubleshooting.md - Common issues and fixes

assets/

• •jwt_verification.py - Complete JWKS verification module template
• •auth_dependencies.py - FastAPI dependencies template
• •api_client.ts - Frontend API client template
• •better_auth_migrations.py - Alembic migration templates for Better Auth tables (including token column fix)

Why JWKS Over Shared Secret?

Recommendation: Always use JWKS for production.