Paper Reviewer
Comprehensive pre-submission review for journal manuscripts. Orchestrates multiple specialized skills from research-assistant to ensure publication readiness.
When to Use
- •Before submitting papers to journals
- •After completing systematic reviews
- •When preparing dissertation chapters for committee
- •For quality assurance on research manuscripts
Features
- •AI Text Detection - Identify LLM-generated patterns
- •Methodology Assessment - Verify research design rigor
- •Bias Detection - Apply RoB 2, ROBINS-I, QUADAS-2 frameworks
- •Statistical Validation - Check assumptions, effect sizes, power analysis
- •Reporting Compliance - Validate CONSORT, PRISMA, STROBE guidelines
- •Citation Integrity - Verify references, check for retractions
- •Reproducibility Audit - Assess code/data availability
Usage
code
Review the manuscript at ~/Documents/submissions/AffectivePrompting/ for journal submission. This is a systematic review targeting IEEE Transactions.
Review Pipeline
Phase 1: Triage
- •Classify paper type (RCT, systematic review, observational, etc.)
- •Identify target journal requirements
- •List available files
Phase 2: AI Detection
- •Run ai-check skill
- •Flag sections with AI patterns >30%
- •Generate authenticity report
Phase 3: Methodology
- •Assess study design appropriateness
- •Verify protocol adherence
- •Check randomization/blinding (if applicable)
Phase 4: Risk of Bias
- •Apply appropriate RoB tool
- •Document domain-by-domain assessment
- •Generate traffic light visualization
Phase 5: Statistical Validation
- •Verify assumption testing
- •Check effect size reporting
- •Validate power analysis
Phase 6: Reporting Compliance
- •Apply appropriate checklist (CONSORT/PRISMA/STROBE)
- •Calculate compliance percentage
- •List missing items
Phase 7: Citation Audit
- •Verify all references
- •Check for retractions
- •Validate DOIs
Phase 8: Reproducibility
- •Check code availability
- •Verify data accessibility
- •Assess documentation completeness
Output
Generates comprehensive review report:
- •Executive summary with overall assessment
- •Section-by-section findings
- •Priority-ranked revision checklist
- •Detailed appendices
Paper Type-Specific Workflows
Systematic Reviews
- •PRISMA 2020 compliance
- •AMSTAR 2 quality assessment
- •Meta-analysis validation
RCTs
- •CONSORT compliance
- •RoB 2 bias assessment
- •ITT/per-protocol analysis check
Observational Studies
- •STROBE compliance
- •ROBINS-I bias assessment
- •Confounding control verification
Integration
Uses research-assistant skills:
- •ai-check
- •risk-of-bias
- •hypothesis-test
- •effect-size
- •power-analysis
- •publication-prep
- •citation-format
- •prisma-diagram
Configuration
Default thresholds (can override):
- •AI detection: 30% (flag if higher)
- •Reporting compliance: 85% minimum
- •All 8 phases enabled by default
Part of ai_scientist research workflow automation