AgentSkillsCN

pubmed-literature-miner

利用 PubMed/MEDLINE 进行生物医学文献挖掘，为系统性综述提供支持

SKILL.md
--- frontmatter
name: pubmed-literature-miner
description: Biomedical literature mining using PubMed/MEDLINE for systematic review support
allowed-tools:
  - Bash
  - Read
  - Write
  - Edit
  - Glob
  - Grep
  - WebFetch
metadata:
  specialization: scientific-discovery
  domain: science
  category: literature-knowledge
  phase: 6

PubMed Literature Miner

Purpose

Provides biomedical literature mining capabilities using PubMed/MEDLINE for systematic review support and PICO framework analysis.

Capabilities

  • •MeSH term-based search
  • •PICO element extraction
  • •Abstract screening automation
  • •Citation deduplication
  • •PRISMA flow diagram data generation
  • •Full-text retrieval coordination

Usage Guidelines

  1. •MeSH Terms: Use controlled vocabulary for precise searches
  2. •PICO Framework: Structure searches around population, intervention, comparison, outcome
  3. •Screening: Apply inclusion/exclusion criteria systematically
  4. •PRISMA Compliance: Generate required flow diagram data

Tools/Libraries

  • •Biopython
  • •PyMed
  • •NCBI E-utilities